Welcome to SYstems Genetic Network AnaLysis Pipeline (SYGNAL)
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Contents:
Installation
cMonkey
2
SYGNAL dependencies
Installing SYGNAL
Preparing for SYGNAL run
Overview of SYGNAL method
Directory structure for running cMonkey2 and SYGNAL
Running cMonkey
2
start_cMonkey.sh
pipeline.json
pita_config.json
Overlaying SYGNAL on alternative clustering methods
Running SYGNAL
Command line parameters
Input files
cMonkey
2
output database
User supplied cMonkey
2
expression matrix
Typical run of SYGNAL
Typical output from running SYGNAL
Indices and tables
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Index
Module Index
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SYstems Genetic Network AnaLysis Pipeline
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Installation
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Running SYGNAL
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