Welcome to SYstems Genetic Network AnaLysis Pipeline (SYGNAL)

Contents:

• Installation
  • cMonkey₂
  • SYGNAL dependencies
  • Installing SYGNAL
• Preparing for SYGNAL run
  • Overview of SYGNAL method
  • Directory structure for running cMonkey2 and SYGNAL
  • Running cMonkey₂
  • start_cMonkey.sh
  • pipeline.json
  • pita_config.json
  • Overlaying SYGNAL on alternative clustering methods
• Running SYGNAL
  • Command line parameters
  • Input files
  • cMonkey₂ output database
  • User supplied cMonkey₂ expression matrix
  • Typical run of SYGNAL
  • Typical output from running SYGNAL

Indices and tables

• Index
• Module Index
• Search Page